Publications
Journal Publications
Also in Google Scholar.
Efficient dispersion modeling in optical multimode fiber
S.-Y. Lee, V. J. Parot, B. E. Bouma, and M. Villiger
Light: Science & Applications, vol. 12, no. 1, (2023). main pdf, pdf supplement, publisher’s link, in the news
Video-based pooled screening yields improved far-red genetically encoded voltage indicators
H. Tian, H. C. Davis, J. D. Wong-Campos, P. Park, L. Z. Fan, B. Gmeiner, S. Begum, C. A. Werley, G. B. Borja, H. Upadhyay, H. Shah, J. Jacques, Y. Qi, V. Parot, K. Deisseroth and A. E. Cohen
Nature Methods (2023). read main text here, pdf supplement, publisher’s link
Confocal 3d reflectance imaging through multimode fiber without wavefront shaping
S.-Y. Lee, V. J. Parot, B. E. Bouma, and M. Villiger
Optica, vol. 9, pp. 112–120, (2022). main pdf, pdf supplement, publisher’s link
Reciprocity-induced symmetry in the round-trip transmission through complex systems
S.-Y. Lee, V. J. Parot, B. E. Bouma, and M. Villiger
APL Photonics, vol. 5, p. 106104, (2020). pdf, publisher’s link
All-Optical Electrophysiology Reveals the Role of Lateral Inhibitionin Sensory Processing in Cortical Layer 1
L. Z. Fan, S. Kheifets, U. L. Bohm, H. Wu, K. D. Piatkevich, M. E. Xie, V. Parot, Y. Ha, K. E. Evans, E. S.Boyden, A. E. Takesian, and A. E. Cohen
Cell 180, 1–15 (2020). pdf, publisher’s link
All-optical electrophysiology reveals brain-state dependent changes in hippocampal subthreshold dynamics and excitability
Adam, Y., Kim, J.J., Lou, S., Zhao, Y., Xie, M.E., Brinks, D., Wu, H., Mostajo-Radji, M.A., Kheifets, S., Parot, V.J., Chettih, S., Williams, K.J., Gmeiner, B., Farhi, S.L., Madisen, L., Buchanan, E.K., Kinsella, I., Zhou, D. Paninski, L., Harvey, C.D., Zeng, H., Arlotta, P., Campbell, R.E. and Cohen, A.E.
Nature 569, 413-417 (2019). preprint pdf, publisher’s link, Harvard Chemistry news
Compressed Hadamard Microscopy for high-speed optically sectioned neuronal activity recordings
Parot V.J.*, Sing-Long C.*, Adam Y., Böhm U.L., Fan L.Z., Farhi S.L. and Cohen A.E.
Journal of Physics D: Applied Physics 52 144001, Special issue on neurophotonics (2019). pdf, publisher’s link
Wide-area all-optical neurophysiology in acute brain slices
Farhi, S.L.*, Parot, V.J.*, Grama, A., Yamagata, M., Abdelfattah, A.S., Adam, Y., Lou, S., Kim, J.J., Campbell, R.E., Cox, D.D. and Cohen, A.E. pdf, publisher’s link, cover
Genetically targeted all-optical electrophysiology with a transgenic Cre-dependent Optopatch mouse
S. Lou, Y. Adam, E.N. Weinstein, E. Williams, K. Williams, V. Parot, N. Kavokine, S. Liberles, L. Madisen, H. Zeng, and A.E. Cohen
Journal of Neuroscience, 36(43), pp.11059-11073 (2016). main pdf, supplement pdf, publisher’s link
Recovery and normalization of triple coincidences in PET
E. Lage, V. Parot, S. C. Moore, A. Sitek, J. M. Udías, S. R. Dave, M. Park, J. J. Vaquero and J. L. Herraiz
Med. Phys. 42, 1398 (2015). pdf, publisher’s link
Simulation of triple coincidences in PET
J. Cal-Gonzalez, E. Lage, E. Herranz, E. Vicente, J. Udias, S. Moore, M. Park, S. Dave, V. Parot and J. L. Herraiz
Phys. Med. Biol. 60, 117 (2014). pdf, publisher’s link
Three dimensional imaging techniques for improved colonoscopy
N. J. Durr, G. Gonzalez and V. Parot
Expert Review of Medical Devices, 11(2):105-107 (2014). pdf, publisher’s link
Photometric stereo endoscopy
V. Parot, D. Lim, G González, G. Traverso, N. S. Nishioka, B. J. Vakoc and N. J. Durr
Journal of Biomedical Optics, 18(7):076017-076017 (2013). pdf, publisher’s link, MIT news
Application of the fractional fourier transform to image reconstruction in MRI
V. Parot, C. Sing-Long, C. Lizama, C. Tejos, S. Uribe and P. Irarrazaval
Magnetic Resonance in Medicine, 68:17–29 (2012). pdf, publisher’s link
Quantitative assessments of geometric errors for rapid prototyping in medical applications
C. Arrieta, S. Uribe, J. Ramos-Grez, A. Vargas, P. Irarrazaval, V. Parot and C. Tejos
Rapid Prototyping Journal, 18/6 (2012) 431–442. pdf, publisher’s link
Chemical species separation with simultaneous estimation of field map and T2* image using a k-space formulation
J. L. Honorato, V. Parot, C. Tejos, S. Uribe and P. Irarrazaval
Magnetic Resonance in Medicine, 68:400–408 (2012). pdf, publisher’s link
The fractional Fourier transform and quadratic field magnetic resonance imaging
P. Irarrazaval, C. Lizama, V. Parot, C. Sing-Long, C. Tejos
Computers & Mathematics with Applications, vol. 62, no. 3, Aug 2011, 1576-1590. pdf, publisher’s link
Extended Kalman filter estimates the contour length of a protein in single molecule atomic force microscopy experiments
V. I. Fernandez, P. Kosuri, V. Parot, J. M. Fernandez
Review of Scientific Instruments, 80, 113104 (2009). pdf, publisher’s link
* Denotes equal contribution
Selected Conference Presentations
Multiple scattering anisotropy contrast using localization-diverse OCT
V. J. Parot, T. M. Cannon, M. Villiger, N. Uribe-Patarroyo, and B. E. Bouma
Proceedings Volume 11657, Biomedical Applications of Light Scattering XI; 116570A (2021). publisher’s link
Microsecond Timescale Selective Access Two-photon Targeting for Functional Measurements in Tissue
V. J. Parot*, S. Nichols*, G. Testa-Silva, and A. E. Cohen
Biophotonics Congress: Biomedical Optics, p. BTu1C.6 (2020). pdf, publisher’s link
A New Approach for Multiplexed PET Imaging
V. Parot, J. L. Herraiz, S. R. Dave, J. M. Udias, S. C. Moore, M.-A. Park, J. J. Vaquero, and E. Lage
IEEE NSS/MIC, p. M03.5, (2013). pdf
* Denotes equal contribution
Theses
All-optical neurophysiology using high-speed wide-area optical sectioning
Vicente J. Parot
PhD, Harvard University, May 2019. pdf
Application of the fractional Fourier transform to image reconstruction in MRI
Vicente J. Parot
MS, Pontifical Catholic University of Chile, Dec 2009. pdf
Intellectual Property
List in Google Patents.
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