Journal Publications

Also in Google Scholar.

Efficient dispersion modeling in optical multimode fiber
S.-Y. Lee, V. J. Parot, B. E. Bouma, and M. Villiger
Light: Science & Applications, vol. 12, no. 1, (2023). main pdf, pdf supplement, publisher’s link, in the news

Video-based pooled screening yields improved far-red genetically encoded voltage indicators
H. Tian, H. C. Davis, J. D. Wong-Campos, P. Park, L. Z. Fan, B. Gmeiner, S. Begum, C. A. Werley, G. B. Borja, H. Upadhyay, H. Shah, J. Jacques, Y. Qi, V. Parot, K. Deisseroth and A. E. Cohen
Nature Methods (2023). read main text here, pdf supplement, publisher’s link

Confocal 3d reflectance imaging through multimode fiber without wavefront shaping
S.-Y. Lee, V. J. Parot, B. E. Bouma, and M. Villiger
Optica, vol. 9, pp. 112–120, (2022). main pdf, pdf supplement, publisher’s link

Reciprocity-induced symmetry in the round-trip transmission through complex systems
S.-Y. Lee, V. J. Parot, B. E. Bouma, and M. Villiger
APL Photonics, vol. 5, p. 106104, (2020). pdf, publisher’s link

All-Optical Electrophysiology Reveals the Role of Lateral Inhibitionin Sensory Processing in Cortical Layer 1
L. Z. Fan, S. Kheifets, U. L. Bohm, H. Wu, K. D. Piatkevich, M. E. Xie, V. Parot, Y. Ha, K. E. Evans, E. S.Boyden, A. E. Takesian, and A. E. Cohen
Cell 180, 1–15 (2020). pdf, publisher’s link

All-optical electrophysiology reveals brain-state dependent changes in hippocampal subthreshold dynamics and excitability
Adam, Y., Kim, J.J., Lou, S., Zhao, Y., Xie, M.E., Brinks, D., Wu, H., Mostajo-Radji, M.A., Kheifets, S., Parot, V.J., Chettih, S., Williams, K.J., Gmeiner, B., Farhi, S.L., Madisen, L., Buchanan, E.K., Kinsella, I., Zhou, D. Paninski, L., Harvey, C.D., Zeng, H., Arlotta, P., Campbell, R.E. and Cohen, A.E.
Nature 569, 413-417 (2019). preprint pdf, publisher’s link, Harvard Chemistry news

Compressed Hadamard Microscopy for high-speed optically sectioned neuronal activity recordings
Parot V.J.*, Sing-Long C.*, Adam Y., Böhm U.L., Fan L.Z., Farhi S.L. and Cohen A.E.
Journal of Physics D: Applied Physics 52 144001, Special issue on neurophotonics (2019). pdf, publisher’s link

Wide-area all-optical neurophysiology in acute brain slices
Farhi, S.L.*, Parot, V.J.*, Grama, A., Yamagata, M., Abdelfattah, A.S., Adam, Y., Lou, S., Kim, J.J., Campbell, R.E., Cox, D.D. and Cohen, A.E. pdf, publisher’s link, cover

Genetically targeted all-optical electrophysiology with a transgenic Cre-dependent Optopatch mouse
S. Lou, Y. Adam, E.N. Weinstein, E. Williams, K. Williams, V. Parot, N. Kavokine, S. Liberles, L. Madisen, H. Zeng, and A.E. Cohen
Journal of Neuroscience, 36(43), pp.11059-11073 (2016). main pdf, supplement pdf, publisher’s link

Recovery and normalization of triple coincidences in PET
E. Lage, V. Parot, S. C. Moore, A. Sitek, J. M. Udías, S. R. Dave, M. Park, J. J. Vaquero and J. L. Herraiz
Med. Phys. 42, 1398 (2015). pdf, publisher’s link

Simulation of triple coincidences in PET
J. Cal-Gonzalez, E. Lage, E. Herranz, E. Vicente, J. Udias, S. Moore, M. Park, S. Dave, V. Parot and J. L. Herraiz
Phys. Med. Biol. 60, 117 (2014). pdf, publisher’s link

Three dimensional imaging techniques for improved colonoscopy
N. J. Durr, G. Gonzalez and V. Parot
Expert Review of Medical Devices, 11(2):105-107 (2014). pdf, publisher’s link

Photometric stereo endoscopy
V. Parot, D. Lim, G González, G. Traverso, N. S. Nishioka, B. J. Vakoc and N. J. Durr
Journal of Biomedical Optics, 18(7):076017-076017 (2013). pdf, publisher’s link, MIT news

Application of the fractional fourier transform to image reconstruction in MRI
V. Parot, C. Sing-Long, C. Lizama, C. Tejos, S. Uribe and P. Irarrazaval
Magnetic Resonance in Medicine, 68:17–29 (2012). pdf, publisher’s link

Quantitative assessments of geometric errors for rapid prototyping in medical applications
C. Arrieta, S. Uribe, J. Ramos-Grez, A. Vargas, P. Irarrazaval, V. Parot and C. Tejos
Rapid Prototyping Journal, 18/6 (2012) 431–442. pdf, publisher’s link

Chemical species separation with simultaneous estimation of field map and T2* image using a k-space formulation
J. L. Honorato, V. Parot, C. Tejos, S. Uribe and P. Irarrazaval
Magnetic Resonance in Medicine, 68:400–408 (2012). pdf, publisher’s link

The fractional Fourier transform and quadratic field magnetic resonance imaging
P. Irarrazaval, C. Lizama, V. Parot, C. Sing-Long, C. Tejos
Computers & Mathematics with Applications, vol. 62, no. 3, Aug 2011, 1576-1590. pdf, publisher’s link

Extended Kalman filter estimates the contour length of a protein in single molecule atomic force microscopy experiments
V. I. Fernandez, P. Kosuri, V. Parot, J. M. Fernandez
Review of Scientific Instruments, 80, 113104 (2009). pdf, publisher’s link

* Denotes equal contribution

Selected Conference Presentations

Multiple scattering anisotropy contrast using localization-diverse OCT
V. J. Parot, T. M. Cannon, M. Villiger, N. Uribe-Patarroyo, and B. E. Bouma
Proceedings Volume 11657, Biomedical Applications of Light Scattering XI; 116570A (2021). publisher’s link

Microsecond Timescale Selective Access Two-photon Targeting for Functional Measurements in Tissue
V. J. Parot*, S. Nichols*, G. Testa-Silva, and A. E. Cohen
Biophotonics Congress: Biomedical Optics, p. BTu1C.6 (2020). pdf, publisher’s link

A New Approach for Multiplexed PET Imaging
V. Parot, J. L. Herraiz, S. R. Dave, J. M. Udias, S. C. Moore, M.-A. Park, J. J. Vaquero, and E. Lage
IEEE NSS/MIC, p. M03.5, (2013). pdf

* Denotes equal contribution


All-optical neurophysiology using high-speed wide-area optical sectioning
Vicente J. Parot
PhD, Harvard University, May 2019. pdf

Application of the fractional Fourier transform to image reconstruction in MRI
Vicente J. Parot
MS, Pontifical Catholic University of Chile, Dec 2009. pdf

Intellectual Property

List in Google Patents.

The documents listed here are available for downloading and have been provided as a means to ensure timely dissemination of scholarly and technical work on a noncommercial basis. Copyright and all rights therein are maintained by the authors or by other copyright holders, notwithstanding that they have offered their works here electronically. It is understood that all persons copying this information will adhere to the terms and constraints invoked by each author’s copyright. These works may not be re-posted without the explicit permission of the copyright holder.

Parot Laboratory - Computational imaging for medicine and biology
Institute for Biological and Medical Engineering, Catholic University of Chile
Avenida Vicuña Mackenna 4860, Macul, Santiago, Chile